2024
Pontes A , Paraíso F, Liu Y-C, Limtong S, Jindamorakot S, Jespersen L, Gonçalves C, Rosa CA, Tsai IJ, Rokas, Hittinger CT, Gonçalves P, Sampaio JP. 2024. Tracking alternative versions of the galactose gene network in the genus Saccharomyces and their expansion after domestication. iScience 27, 108987. https://doi.org/10.1016/j.isci.2024.108987
Rosa CA, Lachance M-A, Limtong S, Santos ARO, Landell MF, Gombert AK, Morais PB, Sampaio JP, Gonçalves C, Gonçalves P, Góes-Neto A, Santa-Brígida R, Martins MB, Janzen DH, Hallwachs W. 2023. Yeasts from tropical forests: biodiversity, ecological interactions, and as sources of bioinnovation Yeast 40, 511-539. https://doi.org/10.1002/yea.3903
2023
Paraíso F, Pontes A, Neves J, Lebani K, Hutzler M, Zhou N, Sampaio JP. 2023. Do microbes evade domestication? – Evaluating potential ferality among diastatic Saccharomyces cerevisiae. Food Microbiology 115, 104320. https://doi.org/10.1016/j.fm.2023.104320
Groenewald M, Hittinger CT, Bensch K, Opulente DA, Shen X-X, Li Y, Liu C, LaBella AL, Zhou X, Limtong S, Jindamorakot S, Gonçalves P, Robert V, Wolfe KH, Rosa CA, Boekhout T, Čadež N, Péter G, Sampaio JP, Lachance M-A, Yurkov AM, Daniel, H-M, Takashima M, Boundy-Mills K, Libkind D, Aoki K, Sugita T, Rokas A. 2023. A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina. Studies in Mycology 105: 1-22. https://doi.org/10.3114/sim.2023.105.01
Makopa TP, Modikwe G, VrhovsekU, Lotti C, Sampaio JP, Zhou N. 2023. The marula and elephant intoxication myth: assessing the biodiversity of fermenting yeasts associated with marula fruits (Sclerocarya birrea). FEMS Microbes xtad018. https://doi.org/10.1093/femsmc/xtad018
Ronquillo Blau C, Escoto D, Hutzler M, Zarnkow M, Jacob F, Sampaio JP. 2023. Production process and physicochemical characterization of the Guatemalan artisanal fermented beverages Boj and Suchiles. Journal of the American Society of Brewing Chemists. https://doi.org/10.1080/03610470.2023.2204300
Peris D, Ubbelohde EJ, Kuang MC, Kominek J, Langdon QK, Adams M, Koshalek JA, Hulfachor AB, Opulente DA, Hall DJ , Hyma K, Fay JC, Leducq J-B, Charron G, Landry CR, Libkind D, Gonçalves C, Gonçalves P, Sampaio JP, Wang Q-M, Bai F-Y, Wrobel RL, Hittinger CT 2023. Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces. Nature Communications 14:690. https://doi.org/10.1038/s41467-023-36139-2
Aires A, Gonçalves C, Sampaio JP 2023. Hannaella floricola sp. nov., a novel basidiomycetous yeast species isolated from a flower of Lantana camara in Portugal. Int J Syst Evol Microbiol Feb;73(2). https://doi.org/10.1099/ijsem.0.005740
2022
Silva M, Pontes A, Franco-Duarte R, Soares P, Sampaio J P, Sousa M J, Brito P H. 2023. A glimpse at an early stage of microbe domestication revealed in the variable genome of Torulaspora delbrueckii, an emergent industrial yeast. Molecular Ecology 32: 2396 – 2412. https://doi.org/10.1111/mec.16428
Sampaio JP 2022. Saccharomyces eubayanus – a tale of endless mysteries. FEMS Yeast Research 22: foac058. https://doi.org/10.1093/femsyr/foac058
Gonçalves P, Gonçalves C. 2022. Horizontal gene transfer in yeasts. Curr. Opin. Genet. Dev. 76:101950. https://doi.org/10.1016/j.gde.2022.101950
Pedras BM, Gonçalves C, Figueira DR, Simões P, Gonçalves P, Paiva A, Barreiros S, Salema-Oom M. 2022. White wine grape pomace as a suitable carbon source for lipid and carotenoid production by fructophilic Rhodorotula babjevae. J. Appl. Microbiol. 133:656-664. https://doi.org/10.1111/jam.15587
Gonçalves C, Marques M, Gonçalves P. 2022. Contrasting strategies for sucrose utilization in a floral yeast clade. mSphere 7:e00035-22. https://doi.org/10.1128/msphere.00035-22
2021
Santos ARO, Aires A, Pontes A, Silva M, Brito PH, Groenewald M, Melo CGS, Lachance M-A, Sampaio JP, Rosa CA. 2021 Phaffia brasiliana sp. nov., a yeast species isolated from soil in a Cerrado–Atlantic Rain Forest ecotone site in Brazil. Int J Syst Evol Microbiol 23:3182-3195. https://doi.org/10.1099/ijsem.0.005080
Yurkov A, Alves A, Bai F-Y, Boundy-Mills K, Buzzini P, Čadež N, Cardinali G, Casaregola S, Chaturvedi V, Collin V, Fell JW, Girard V, Groenewald M, Hagen F, Hittinger CT, Kachalkin AV, Kostrzewa M, Kouvelis V, Libkind D, Liu X, Maier T, Meyer W, Péter G, Piątek M, Robert V, Rosa CA, Sampaio JP, Sipiczki M, Stadler M, Sugita T, Sugiyama J, Takagi H, Takashima M, Turchetti B, Wang Q-M, Boekhout T. 2021. Nomenclatural issues of concern to those working with yeasts and other fungi in culture: why to avoid unneeded name changes. IMA Fungus 12: 18. https://doi.org/10.1186/s43008-021-00067-x
Ruiz J, de Celis M, Martín-Santamaría M, Benito-Vázquez I, Pontes A, Lanza VF, Sampaio JP, Santos A, Belda I. 2021, Global distribution of IRC7 alleles in Saccharomyces cerevisiae populations: a genomic and phenotypic survey within the wine clade. Environmental Microbiology 23: 3182-3195. https://doi.org/10.1111/1462-2920.15540
Cabrita A, David-Palma M, Brito PH, Heitman J, Coelho M, Gonçalves P. 2021. Multiple pathways to homothallism in closely related yeast lineages in the Basidiomycota. mBio 12:e03130-20. doi:https://doi.org/10.1128/mBio.03130-20
2020
David-Palma M, Libkind D, Brito PH, Silva M, Bellora N, Coelho MA, Heitman J, Gonçalves P, Sampaio JP. 2020. The untapped Australasian diversity of astaxanthin-producing yeasts with biotechnological potential – Phaffia australis sp. nov. and Phaffia tasmanica sp. nov. Microorganisms 8: 1651. doi:https://doi.org/10.3390/microorganisms8111651
Koufopanou V, Lomas S, Pronina O, Almeida P, Sampaio JP, MousseauT, Liti G, Burt A. 2020. Population size, sex, and purifying selection: comparative genomics of two sister taxa of the wild yeast Saccharomyces paradoxus. Genome Biology and Evolution 12: 1636–1645. doi:https://doi.org/10.1093/gbe/evaa141
Pontes A, Hutzler M, Brito PH, Sampaio JP. 2020 Revisiting the taxonomic synonyms and populations of Saccharomyces cerevisiae — phylogeny, phenotypes, ecology and domestication. Microorganisms 8: 903. doi: 10.3390/microorganisms8060903
Libkind D, Čadež N, Opulente D, Langdon QK, Rosa CA, Sampaio JP, Gonçalves P, Hittinger CT, Lachance MA. 2020. Towards yeast taxogenomics: description of novel species based on complete genome sequences. FEMS Yeast Research foaa042. doi:10.1093/femsyr/foaa042
Into P, Pontes A, Sampaio JP, Limtong S. 2020. Yeast diversity associated with the phylloplane of corn plants cultivated in Thailand. Microorganisms 8: 80. doi:10.3390/microorganisms8010080
Pontes A, Ruethi J, Frey B, Aires A, Thomas A, Overy D, Halti B, Kerr R, Sampaio JP. 2020. Cryolevonia gen. nov. and Cryolevonia schafbergensis sp. nov., a cryophilic yeast from ancient permafrost and melted sea ice. Int J Syst Evol Microbiol 70: 2334-2338. doi:10.1099/ijsem.0.004040
The Wickerhamiella/Starmerella clade – a treasure trove for the study of the evolution of yeast metabolism. 2020. Gonçalves P, Gonçalves C, Brito PH, Sampaio JP. Yeast 37: 313-320. doi:https://doi.org/10.1002/yea.3463
Li A-H, Yuan F-X, Groenewald M. , Bensch K. , Yurkov AM, Li K, Han P-J, Guo L-D, Aime MC, Sampaio JP, Jindamorakot S, Turchetti B, Inacio J, Fungsin B, Wang Q-M, Bai F-Y. 2020. Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species. Studies in Mycology 96: 17-140. doi:10.1016/j.simyco.2020.01.002
Bahareh G, Ahari, AB, Sampaio JP, Arzanlou M. 2020. Biodiversity of epiphytic and endophytic yeasts on grape berries in Iran. Nova Hedwigia 110: 137-156. doi:10.1127/nova_hedwigia/2020/0569
2019
Gonçalves C, Gonçalves P.2019. Multilayered horizontal operon transfers from bacteria reconstruct a thiamine salvage pathway in yeasts. Proc Natl Acad Sci U S A 116: 22219-22228. https://doi.org/10.1073/pnas.1909844116
Gonçalves C, Ferreira C, Gonçalves LG, Turner DL, Leandro MJ, Salema-Oom M, Santos H, Gonçalves P 2019. A new pathway for mannitol metabolism in yeasts suggests a link to the evolution of alcoholic fermentation. Frontiers in Microbiology 10: 2510. doi: 10.3389/fmicb.2019.02510
Langdon QK, Peris D, Baker ECP, Opulente DA, Nguyen HV, Bond U, Gonçalves P, Sampaio JP, Libkind D, Hittinger CT. 2019. Fermentation innovation through complex hybridization of wild and domesticated yeasts. Nature Ecology & Evolution 3: 1576–1586. doi:10.1038/s41559-019-0998-8
Li A-H, Zhou Z, Jia B-S, Liu Z-X, Sampaio JP, Zhou Y-G. 2019. Heterocephalacria sinensis sp. nov., Phaeotremella lacus sp. nov. and Solicoccozyma aquatica sp. nov., three novel basidiomycetous yeast species isolated from crater lakes. Int J Syst Evol Microbiol 69: 3728-3739. doi: 10.1099/ijsem.0.003637
Lorenzini M, Zapparoli G, Azzolini M, Carvalho C, Sampaio JP. 2019. Sporobolomyces agrorum sp. nov. and Sporobolomyces sucorum sp. nov., two novel basidiomycetous yeast species isolated from grape and apple must in Italy. Int J Syst Evol Microbiol 69:3385-3391. doi: 10.1099/ijsem.0.003626
Pontes A, Čadež N, Gonçalves P, Sampaio JP. 2019. A quasi-domesticate relic hybrid population of Saccharomyces cerevisiae x S. paradoxus adapted to olive brine. Frontiers in Genetics 10: 449. doi: 10.3389/fgene.2019.00449
Kachalkin AV, Turchetti B, Inácio J, Carvalho C, Mašínová T, Pontes A, Röhl O, Glushakova AM, Akulov A, Baldrian P, Begerow D, Buzzini P, Sampaio JP, Yurkov AM. 2019. Rare and undersampled dimorphic basidiomycetes. Mycological Progress 18:945–971. doi:10.1007/s11557-019-01491-5
2018
Barbosa R, Pontes A, Santos RO, Montandon GG, de Ponzzes-Gomes CM, Morais PB, Gonçalves P, Rosa CA, Sampaio JP. 2018. Multiple rounds of artificial selection promote microbe secondary domestication – the case of cachaça yeasts. Genome Biology and Evolution 10:1939-1955. doi: 10.1093/gbe/evy132
Carvalho C, Tomás A, Libkind D, Imanishi Y, Sampaio JP. 2018. Zygotorulaspora chibaensis sp. nov. and Zygotorulaspora danielsina sp. nov., novel ascomycetous yeast species from tree bark and soil. Int J Syst Evol Microbiol 68:2633-2637. doi: 10.1099/ijsem.0.002889
Barretto DA, Avchar R, Carvalho C, Sampaio JP, Vootla SK, Baghela A 2018. Blastobotrys bombycis sp. nov., a D-xylose-fermenting yeast isolated from the gut of the silkworm larva Bombyx mori. Int J Syst Evol Microbiol 68:2638-2643. doi: 10.1099/ijsem.0.002890
Sampaio JP. 2018. Microbe Profile: Saccharomyces eubayanus, the missing link to lager beer yeasts. Microbiology 164:1069-1071. doi: 10.1099/mic.0.000677
Šibanc N, Zalar P, Schroers H-J, Zajc J, Pontes A, Sampaio JP, Macek I. 2018. Occultifur mephitis f.a., sp. nov. and other yeast species from hypoxic and elevated CO2 mofette environments. Int J Syst Evol Microbiol 68:2285-2298. doi: 10.1099/ijsem.0.002824
Turchetti B, Selbmann L, Gunde-Cimerman N, Buzzini P, Sampaio JP, Zalar P. 2018. Cystobasidium alpinum sp. nov. and Rhodosporidiobolus oreadorum sp. nov. from European cold environments and Arctic region. Life (Basel) 8.pii:E9. doi: 10.3390/life8020009
Branco S, Carpentier F, de la Vega R, Badouin H, Snirc A, Le Prieur S, Coelho MA, de Vienne DM, Hartmann F,Begerow D, Hood ME, Giraud T. 2018. Multiple convergent supergene evolution events in mating-type chromosomes. Nature Communications 9:2000. doi: 10.1038/s41467-018-04380-9
Into P, Pontes A, Jacques N, Casaregola S, Limtong S, Sampaio JP. 2018. Papiliotrema plantarum sp. nov., a novel tremellaceous sexual yeast species. Int J Syst Evol Microbiol 68:1937-1941. doi: 10.1099/ijsem.0.002771
Legras J-L, Galeote V, Bigey F, Camarasa C, Marsit S, Nidelet T, Sanchez I, Couloux A, Guy J, Franco-Duarte R, Marcet-Houben M, Gabaldon T, Schuller D, Sampaio JP, Dequin S. 2018. Adaptation of S. cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication. Molecular Biology and Evolution 35:1712-1727. doi: 10.1093/molbev/msy066
Gonçalves C, Wisecaver JH, Kominek J, Salema-Oom M, Leandro MJ, Shen XX, Opulente DA, Zhou X, Peris D, Kurtzman CP, Hittinger CT, Rokas A, Gonçalves P. 2018. Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage. eLife 7:e33034. https://doi.org/10.7554/eLife.33034
Thanh VN, Hien DD, Yaguchi T, Sampaio JP, Lachance M-A. 2018. Moniliella sojae sp. nov., a species of black yeasts isolated from Vietnamese soy paste (tuong), and reassignment of Moniliella suaveolens strains to Moniliella pyrgileucina sp. nov., Moniliella casei sp. nov., and Moniliella macrospora emend. comb. nov. Int J Syst Evol Microbiol 68:1806-1814. doi: 10.1099/ijsem.0.002690
Nilsson H, Taylor A, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-D, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė L, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg J, Wurzbacher C, van den Wyngaert S, Yilmaz N, Yurkov A, Kõljalg32 U, Abarenkov K. 2018. Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10-11, 2017 workshop (Aberdeen, UK). MycoKeys 28:65-82. doi: 10.3897/mycokeys.28.20887
2017
Sampaio JP, Gonçalves P. 2017. Biogeography and ecology of the genus Saccharomyces. In Yeasts in Natural Ecosystems: Ecology (Eds: P Buzzini, M-A Lachance, A Yurkov) Springer-Verlag, Berlin, pp 131-153. doi:10.1007/978-3-319-61575-2_5
Pontes A, Röhl O, Maldonado C, Yurkov AM, Sampaio JP. 2017. Cryptotrichosporon argae sp. nov., Cryptotrichosporon brontae sp. nov. and Cryptotrichosporon steropae sp. nov., isolated from Mediterranean forest soils. Int J Syst Evol Microbiol 67:3610-3614. doi:10.1099/ijsem.0.002177
Branco S, Badouin H, Rodríguez de la Vega RC, Gouzy J, Carpentier F, Aguileta G, Siguenza S, Brandenburg JT, Coelho MA, Hood ME, Giraud T. 2017. Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism. Proc Natl Acad Sci U S A 114:7067–7072. doi:10.1073/pnas.1701658114
Coelho MA, Bakkeren G, Sun S, Hood ME, Giraud T. 2017. Fungal Sex: The Basidiomycota. Microbiol Spectr. 5: FUNK-0046-2016. doi:10.1128/microbiolspec.FUNK-0046-2016
Gibson B, Geertman JA, Hittinger CT, Krogerus K, Libkind D, Louis EJ, Magalhães F, Sampaio JP. 2017. New yeasts – new brews: modern approaches to brewing yeast design and development. FEMS Yeast Res. 17, fox038. DOI: 10.1093/femsyr/fox038
Peris D, Moriarty RV, Alexander WG, Baker E, Sylvester K, Sardi M, Langdon QK, Libkind D, Wang QM, Bai FY, Leducq JB, Charron G, Landry CR, Sampaio JP, Gonçalves P, Hyma KE, Fay JC, Sato TK, Hittinger CT. 2017. Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production. Biotechnol Biofuels. 10:78.
DOI: 10.1186/s13068-017-0763-7
Almeida P, Barbosa R, Bensasson D, Gonçalves P, Sampaio JP. 2017. Adaptive divergence in wine yeasts and their wild relatives suggests a prominent role for introgressions and rapid evolution at non coding sites. Molecular Ecology 26:2167-2182.
DOI: 10.1111/mec.14071
Sampaio JP, Pontes A, Libkind D, Hutzler M. 2017. Taxonomy, diversity, and typing of brewing yeasts. In Brewing Microbiology: Current Research, Omics and Microbial Ecology (Eds: Charles W. Bamforth and Nicholas A. Bokulich). Caister Academic Press, U.K. pp 88-117.
DOI: 10.21775/9781910190616.04
Mašínová T, Pontes A, Carvalho C, Sampaio JP, Baldrian P. 2017. Libkindia masarykiana gen. nov. et sp. nov., Yurkovia mendeliana gen. nov. et sp. nov., and Leucosporidium krtinense f.a. sp. nov., isolated from temperate forest soils. Int J Syst Evol Microbiol. 67:902-908.
DOI: 10.1099/ijsem.0.001707
2016
Bellora N, Moliné M, David-Palma M, Coelho MA, Hittinger CT, Sampaio JP, Gonçalves P, Libkind D. 2016. Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma. BMC Genomics. 17:901.
DOI:10.1186/s12864-016-3244-7
Gonçalves M, Pontes A, Almeida P, Barbosa R, Serra M, Libkind D, Hutzler M, Gonçalves P, Sampaio JP. 2016. Distinct domestication trajectories in top-fermenting beer yeasts and wine yeasts. Curr Biol. 26:2750-2761.
DOI: 10.1016/j.cub.2016.08.040
Burgaud G, Coton M, Jacques N, Debaets S, Maciel NO, Rosa CA, Gadanho M, Sampaio JP, Casaregola S. 2016. Yamadazyma barbieri f.a. sp. nov., a novel ascomycetous anamorphic yeast isolated from a Mid-Atlantic Ridge hydrothermal site (-2300 m) and marine coastal waters. Int J Syst Evol Microbiol. 66:3600-3606.
DOI:10.1099/ijsem.0.001239
David-Palma M, Sampaio JP, Gonçalves P. 2016. Genetic dissection of sexual reproduction in a primary homothallic basidiomycete. PLoS Genet. 12:e1006110.
DOI:10.1371/journal.pgen.1006110
Yurkov A, Röhl O, Pontes A, Carvalho C, Maldonado C, Sampaio JP. 2016. Local climatic conditions constrain soil yeast diversity patterns in Mediterranean forests, woodlands and scrub biome. FEMS Yeast Research 16:fov103.
DOI:10.1093/femsyr/fov103
Francesca N, Guerreiro MA, Carvalho C, Coelho MA, Alfonzo A, Randazzo W, Sampaio JP, Moschetti G. 2016. Jaminaea phylloscopi sp. nov. (Microstromatales), a basidiomycetous yeast isolated from migratory birds in the Mediterranean basin. Int J Syst Evol Microbiol. 66:824-9.
DOI:10.1099/ijsem.0.000801
Barbosa R, Almeida P, Safar SV, Santos RO, Morais PB, Nielly-Thibault L, Leducq JB, Landry CR, Gonçalves P, Rosa CA, Sampaio JP. 2016. Evidence of natural hybridization in Brazilian wild lineages of Saccharomyces cerevisiae. Genome Biol Evol. 8:317-329.
DOI:10.1093/gbe/evv263
Pontes A, Röhl O, Carvalho C, Maldonado C, Yurkov AM, Sampaio JP. 2016. Cystofilobasidium intermedium sp. nov. and Cystofilobasidium alribaticum f.a. sp. nov. isolated from Mediterranean forest soils. Int J Syst Evol Microbiol. 66:1058-1062.
DOI:doi: 10.1099/ijsem.0.000835
Gonçalves C, Coelho MA, Salema-Oom M, Gonçalves P. 2016. Stepwise functional evolution in a fungal sugar transporter family. Molecular Biology and Evolution 33:352-66.
DOI:10.1093/molbev/msv219
2015
Hittinger CT, Rokas A, Bai FY, Boekhout T, Gonçalves P, Jeffries TW, Kominek J, Lachance MA, Libkind D, Rosa CA, Sampaio JP, Kurtzman CP. 2015. Genomics and the making of yeast biodiversity. Curr Opin Genet Dev 35:100-9.
DOI:10.1016/j.gde.2015.10.008
Freitas LF, Barbosa R, Sampaio JP, Lachance MA, Rosa CA. 2015. Starmera pilosocereana sp. nov., a yeast isolated from necrotic tissue of cacti in a sandy coastal dune ecosystem. Int J Syst Evol Microbiol 65:4474-8.
DOI: 10.1099/ijsem.0.000596
Almeida P, Barbosa R, Zalar P, Imanishi Y, Shimizu K, Turchetti B, Legras JL, Serra M, Dequin S, Couloux A, Guy J, Bensasson D, Gonçalves P, Sampaio JP. 2015. A Population genomics insight into the Mediterranean origins of wine yeast domestication. Molecular Ecology 24:5412-27.
DOI: 10.1111/mec.13341
Maia TM, Lopes ST, Almeida JMFCF, Rosa LH, Sampaio JP, Gonçalves P, Coelho MA. Evolution of mating systems in basidiomycetes and the genetic architecture underlying mating-type determination in the yeast Leucosporidium scottii. Genetics 201:75-89.
DOI: 10.1534/genetics.115.177717.
Coelho MA, Almeida JMGCF, Hittinger CT, Gonçalves P. Draft genome sequence of Sporidiobolus salmonicolor CBS 6832, a red-pigmented basidiomycetous yeast. Genome Announcements 3:e00444-15.
DOI: 10.1128/genomeA.00444-15.
de Garcia V, Coelho MA, Maia TM, Rosa LH, Vaz AM, Rosa CA, Sampaio JP, Gonçalves P, van Broock M, Libkind D. 2015. Sex in the cold: taxonomic reorganization of psychrotolerant yeasts in the order Leucosporidiales. FEMS Yeast Research 15:4.
DOI: http://dx.doi.org/10.1093/femsyr/fov019
Gomes F, Safar S, Marques A, Medeiros A, Santos R, Carvalho C, Lachance M-A, Sampaio JP, Rosa C. 2014. The diversity and extracellular enzymatic activities of yeasts isolated from water tanks of Vriesea minarum, an endangered bromeliad species in Brazil, and the description of Occultifur brasiliensis f.a., sp. nov. Antonie van Leeuwenhoek 107:597-611.
DOI: 10.1007/s10482-014-0356-4.
2014
Weiss M, Bauer R, Sampaio JP, Oberwinkler F. 2014. Tremellomycetes and related groups. pp 331-355. In The Mycota Volume 7A – Systematics and Evolution (Eds. DJ McLaughlin, JW Spatafora). Springer, Berlin, Heidelberg.
Francesca N, Carvalho C, Sannino C, Guerreiro M A, Almeida P M, Settanni L, Massa B, Sampaio JP, Moschetti G.2014. Yeasts vectored by migratory birds collected in the Mediterranean island of Ustica and description of Phaffomyces usticensis f.a. sp. nov., a new species related to the cactus ecoclade. FEMS Yeast Research 14: 910-921.
DOI: 10.1111/1567-1364.12179.
Almeida P&, Gonçalves C&, Teixeira S, Libkind D, Bontrager M, Masneuf-Pomarède I, Albertin W, Durrens P, Sherman DJ, Marullo P, Hittinger CT, Gonçalves P, Sampaio JP. 2014. A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum. Nature Communications 5:4044.
(& equally contributing)DOI:10.1038/ncomms5044
Peris D, Sylvester K, Libkind D, Gonçalves P, Sampaio JP, Alexander WG, Hittinger CT. 2014. Population Structure and Reticulate Evolution of Saccharomyces eubayanus and Its Lager-Brewing Hybrids. Molecular Ecology 23: 2031–2045.
DOI:10.1111/mec.12702
David-Palma M, Libkind D, Sampaio JP. 2014. Global distribution, diversity hotspots and niche transitions of an astaxanthin-producing eukaryotic microbe. Molecular Ecology 23: 921-932.
DOI:10.1111/mec.12642
Leducq J-B, Guillaume C, Samani P, Dubé AK, Sylvester K, James B, Almeida P, Sampaio JP, Hittinger CT, Bell G, Landry CR. 2014. Local climatic adaptation in a widespread microorganism. Proceedings of the Royal Society B 281: 20132472.
DOI:10.1098/rspb.2013.2472
2013
Francesca N, Carvalho C, Almeida PM, Sannino C, Settanni L, Sampaio JP, Moschetti G. 2013. Wicherhamomyces sylviae f.a., sp. nov., an ascomycetous yeast species isolated from migratory birds in Sicily, Italy. International Journal of Systematic and Evolutionary Microbiology 63: 4824–4830.
DOI:10.1099/ijs.0.056382-0
Coelho MA, Gonçalves C, Sampaio JP, Gonçalves P. 2013. Extensive intra-kingdom horizontal gene transfer converging on a fungal fructose transporter gene. PLoS Genet. 9(6): e1003587.
DOI:10.1371/journal.pgen.1003587.
Coelho MA, Sampaio JP, Gonçalves P. 2013. Living and thriving on the skin: Malassezia genomes tell the story. mBio 4:e00117-13. doi:10.1128/mBio.00117-13.
DOI:10.1128/mBio.00117-13
Anjos J, de Sousa HR, Roca C, Cássio F, Luttik M, Pronk JT, Salema-Oom M,Gonçalves P. 2013. Fsy1, the sole hexose-proton transporter characterized in Saccharomyces yeasts, exhibits a variable fructose:H(+) stoichiometry. Biochim Biophys Acta 1828: 201–207.
DOI:10.1016/j.bbamem.2012.08.011
2012
Gomes-Rezende JA, Gomes-Alves AG, Menino JF, Coelho MA, Ludovico P, Gonçalves P, Mark H. J. Sturme, Rodrigues F. 2012. Functionality of the Paracoccidioides Mating a-Pheromone-Receptor System. PLoS ONE 7(10): e47033.
DOI:10.1371/journal.pone.0047033Petit E, Giraud T, de Vien ne DM, Coelho MA, Aguileta G, Amselem J, Kreplak J, Poulain J, Gavory F, Wincker P, Young SK, Cuomo CA, Perlin MH, Hood ME. 2012. Linkage to the mating-type locus across the genus Microbotryum: Insights into non-recombining chromosomes. Evolution 66: 3519–3533.DOI:10.1111/j.1558-5646.2012.01703.x
2011
Libkind D, Hittinger CT, Valério E, Gonçalves C, Dover J, Johnston M, Gonçalves P, Sampaio JP. 2011. Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proceedings of the National Academy of Sciences USA 108: 14539-14544.*cover
DOI 10.1073/pnas.1105430108
Gonçalves P, Valério E, Correia C, Almeida JMGCF, Sampaio JP. 2011. Evidence for divergent evolution of growth temperature preference in sympatric Saccharomyces species. PLoS ONE 6 (6): e20739.
DOI:10.1371/journal.pone.0020739
Salema-Oom M, De Sousa HR, Assunção M, Gonçalves P, Spencer-Martins I. 2011. Derepression of a baker’s yeast strain for maltose utilization is associated with severe deregulation of HXT gene expression. J Appl Microbiol. 110: 364-374.
DOI: 10.1111/j.1365-2672.2010.04895.x
Libkind D, Moliné M, Sommaruga R, Sampaio JP, van Broock, M. 2011. Phylogenetic distribution of fungal mycosporines within the Pucciniomycotina (Basidiomycota). Yeast 28: 619-627.
DOI: 10.1002/yea.1891
Libkind D, Tognetti C; Ruffini A, Sampaio JP, van Broock M. 2011. Xanthophyllomyces dendrorhous (Phaffia rhodozyma) on stromata of Cyttaria hariotii in northwestern Patagonian Nothofagus forests. Revista Argentina de Microbiologia 43: 226-232.
Coelho MA, Gonçalves P, Sampaio JP. 2011. Evidence for maintenance of sex determinants but not of sexual stages in red yeasts, a group of early diverged basidiomycetes. BMC Evolutionary Biology 11: 249.
DOI 10.1186/1471-2148-11-249
Berraf-Tebbal, A, Bouznad Z, Santos JM, Coelho MA, Péros JP, Phillips AJL. 2011. Phaeoacremonium species associated with Eutypa dieback and esca of grapevines in Algeria. Phytopathologia Mediterranea 50S: 86-97.
DOI:10.14601/Phytopathol_Mediterr-9025.
Burgaud G, Arzur D, Sampaio JP, Barbier, G. 2011. Candida oceani sp nov., a novel yeast isolated from a Mid-Atlantic Ridge hydrothermal vent (-2300 meters). Antonie van Leeuwenhoek 100: 75-82.
DOI 10.1007/s10482-011-9566-1
2010
Hittinger CT, Gonçalves P, Sampaio JP, Dover J, Johnston M, Rokas A. 2010. Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature 464: 54-58.
DOI:10.1038/nature08791
Coelho MA, Sampaio JP, Gonçalves P. 2010. A deviation from the bipolar-tetrapolar mating paradigm in an early diverged basidiomycete. PLoS Genetics 6(8): e1001052.
DOI:10.1371/journal.pgen.1001052
Libkind D, Sampaio JP and van Broock M. 2010. Cystobasidiomycetes yeasts from Patagonia (Argentina): description of Rhodotorula meli sp. nov. from glacial meltwater. International Journal of Systematic and Evolutionary Microbiology 60: 2251-2256.
DOI 10.1099/ijs.0.018499-0
Russo G, Libkind D, Ulloa RJ, de García V, Sampaio JP and van Broock MR. 2010. Cryptococcus agrionensis sp. nov., a basidiomycetous yeast of the acidic rock drainage ecoclade, isolated from acidic aquatic environment of volcanic origin (River Agrio, Argentina). International Journal of Systematic and Evolutionary Microbiology 60: 996-1000.
DOI 10.1099/ijs.0.012534-0
Coelho MA, Almeida JMF, Martins IM, Jorge da Silva A and Sampaio JP. 2010. The dynamics of the yeast community of the Tagus river estuary – testing the hypothesis of the multiple origins of estuarine yeasts. Antonie van Leeuwenhoek 98: 331-342.
DOI 10.1007/s10482-010-9445-1
Galeote V, Novo M, Salema-Oom M, Brion C , Valério E,Gonçalves P, Dequin S. 2010. FSY1, a horizontally transferred gene in the Saccharomyces cerevisiae EC1118 wine yeast strain, encodes a high-affinity fructose/H+ symporter. Microbiology 156: 3754-3761.
DOI: 10.1099/mic.0.041673-0
2009
Leandro MJ, Fonseca C, Gonçalves P. 2009. Hexose and pentose transporters in yeasts: an overview. FEMS Yeast Res. 9: 511-525.
DOI: 10.1111/j.1567-1364.2009.00509.x.
Libkind D, Gadanho M, van Broock M and Sampaio JP. 2009. Cystofilobasidium lacus-mascardii sp. nov., a basidiomycetous yeast species isolated from aquatic environments of the Patagonian Andes, and Cystofilobasidium macerans sp. nov., the sexual stage of Cryptococcus macerans. International Journal of Systematic and Evolutionary Microbiology 59: 622 – 630.
DOI 10.1099/ijs.0.004390-0.
Lourenço MJL and Sampaio JP. 2009. Microbial deterioration of gelatin emulsion photographs: Differences of susceptibility between black and white and colour materials. International Biodeterioration and Biodegradation 63: 496-502.
DOI:10.1016/j.ibiod.2008.10.011.
Gadanho M and Sampaio JP. 2009. Cryptococcus ibericus sp. nov., Cryptococcus aciditolerans sp. nov. and Cryptococcus metallitolerans sp. nov., a new ecoclade of anamorphic basidiomycetous yeast species from an extreme environment associated with acid rock drainage in São Domingos pyrite mine, Portugal. International Journal of Systematic and Evolutionary Microbiology 59: 2375-2379.
DOI 10.1099/ijs.0.008920-0.
Libkind D, Moliné M, Sampaio JP and van Broock M. 2009. Yeasts from high-altitude lakes: influence of UV radiation. FEMS Microbiology Ecology 69: 353-362.
DOI 10.1111/j.1574-6941.2009.00728.x.
2008
Coelho MA, Rosa Á, Rodrigues N, Fonseca Á and Gonçalves P. 2008. Identification of mating type genes in the bipolar basidiomycetous yeast Rhodosporidium toruloides: first insight into the MAT locus structure of the Sporidiobolales. Eukaryotic Cell 7: 1053-1061.
DOI:10.1128/EC.00025-08
Valério E, Gadanho M and Sampaio JP. 2008 Sporidiobolus johnsonii and Sporidiobolus salmonicolor revisited. Mycological Progress 7: 125-131.
DOI: 10.1007/s11557-007-0547-8
Valério E, Gadanho M and Sampaio JP. 2008. A reappraisal of the Sporobolomyces roseus species complex and description of Sporidiobolus metaroseus sp. nov. International Journal of Systematic and Evolutionary Microbiology 58: 736-741.
DOI: 10.1099/ijs.0.65580-0
Sampaio JP and Gonçalves P. 2008. Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and sympatric with S. cerevisiae and S. paradoxus. Applied and Environmental Microbiology 74: 2144-2152.
DOI:10.1128/AEM.02396-07
Russo G, Libkind D, Sampaio JP and van Brook MR 2008. Yeast diversity in the acidic Rio Agrio-Lake Caviahue volcanic environment (Patagonia, Argentina). FEMS Microbiology Ecology 65: 415-424.
DOI:10.1111/j.1574-6941.2008.00514.x
Libkind D, Gadanho M, van Broock M and Sampaio JP. 2008. Studies on the heterogeneity of the carotenogenic yeast Rhodotorula mucilaginosa from Patagonia, Argentina. Journal of Basic Microbiology 48: 93-98.
DOI 10.1002/jobm.200700257
Leandro MJ, Spencer-Martins I, Gonçalves P. 2008. The expression in Saccharomyces cerevisiae of a glucose/xylose symporter from Candida intermedia is affected by the presence of a glucose/xylose facilitator. Microbiology 154:1646-1655.
DOI: 10.1099/mic.0.2007/015511-0
2007
Libkind D, Ruffini A, van Broock M, Alves L, and Sampaio JP. 2007. Biogeography, host-specificity and molecular phylogeny of the basidiomycetous yeast Phaffia rhodozyma and its sexual state Xanthophyllomyces dendrorhous. Applied and Environmental Microbiology 73: 1120-1125.
DOI:10.1128/AEM.01432-06
Hibbett D, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James TY, Kirk PM, Lucking R, Lumbsch HT, Lutzoni FL, Matheny PB, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora, JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai Y-C, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde, KD, Ironside JE, Koljag U, Kurtzman CP, Larsson K-H, Lichtwardt R, Longcore J, Miadlikowska J, Miller A, Moncalvo J-M, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schußler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao Y-J, and Zhang N. 2007. A higher-level phylogenetic classification of the Fungi. Mycological Research 111: 509-547.
DOI:10.1016/j.mycres.2007.03.004
Sampaio A, Sampaio JP and Leão C. 2007. Dynamics of yeast populations recovered from decaying leaves in a nonpolluted stream: a 2-year study on the effects of leaf litter type and decomposition time. FEMS Yeast Research 7: 595-603.
DOI: 10.1111/j.1567-1364.2007.00218.x
Margesin R, Fonteyne P-A, Schinner F and Sampaio JP. 2007. Rhodotorula psychrophila sp. nov., Rhodotorula psychrophenolica sp. nov., and Rhodotorula glacialis sp. nov., novel psychrophilic basidiomycetous yeast species from alpine environments. International Journal of Systematic and Evolutionary Microbiology 57: 2179-2184.
DOI: 10.1099/ijs.0.65111-0
2006
Gadanho M, Libkind D and Sampaio JP. 2006. Yeast diversity in the extreme acidic environments of the Iberian Pyrite Belt. Microbial Ecology 52: 552-563. DOI: 10.1007/s00248-006-9027-y
Gadanho M. and Sampaio JP. 2006. Microeukaryotic diversity in the extreme environments of the Iberian Pyrite Belt: a comparison between universal and fungi-specific primer sets, temperature gradient gel electrophoresis and cloning. FEMS Microbiology Ecology 57: 139-148. DOI: 10.1111/j.1574-6941.2006.00098.x
Bauer R, Begerow D, Sampaio JP, Weiß M and Oberwinkler F. 2006. The simple-septate basidiomycetes: a synopsis. Mycological Progress 5: 41-66. DOI: 10.1007/s11557-006-0502-0
Golubev WI, Sampaio JP, Alves L and Golubeva EW. 2006. Cryptococcus silvicola nov. sp. from nature reserves in Russia and Portugal. 2006. Antonie van Leeuwenhoek 89: 45-51. DOI: 10.1007/s10482-005-9008-z
Golubev WI, Sampaio JP and Golubeva EW. 2006. Cryptococcus stepposus, a new filobasidiaceous yeast species found in the Prioksko-terrasny biosphere reserve in Russia. Mycological Research 110: 957-961. DOI: 10.1016/j.mycres.2006.04.006
Aime C, Matheny PB, Henk DA, Frieders EM, Nilsson H, Piepenbring M, McLaughlin DJ, Szabo LJ, Begerow D, Sampaio JP, Bauer R, Weiss M, Oberwinkler F and Hibbett D. 2006. An overview of the higher-level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. Mycologia 98: 896-905. DOI: 10.3852/mycologia.98.6.896
Leandro MJ, Gonçalves P, Spencer-Martins I.2006. Two glucose/xylose transporter genes from the yeast Candida intermedia: first molecular characterization of a yeast xylose/H + symporter. Biochem J. 395: 543-549.
DOI:10.1042/BJ20051465
2005
Salema-Oom M, Valadao Pinto V, Goncalves P, Spencer-Martins I. 2005. Maltotriose utilization by industrial Saccharomyces strains: characterization of a new member of the alpha-glucoside transporter family. Appl Environ Microbiol. 71:5044-5049.
DOI: 10.1128/AEM.71.9.5044-5049.2005.Libkind D, Gadanho M, van Broock M and Sampaio JP. 2005. Sporidiobolus longiusculus sp. nov. and Sporobolomyces patagonicus sp. nov., two novel yeasts of the Sporidiobolales isolated from aquatic environments in Patagonia, Argentina. International Journal of Systematic and Evolutionary Microbiology 55: 503-509. DOI: 10.1099/ijs.0.63322-0 Gadanho M and Sampaio JP. 2005. Occurrence and diversity of yeasts in the Mid-Atlantic Ridge hydrothermal fields near the Azores archipelago. Microbial Ecology 50: 408-417. DOI: 10.1007/s00248-005-0195-y Kolozsvári-Nagy J, Sule S and Sampaio JP. 2005. Apple tissue culture contamination by Rhodotorula spp.: Identification and prevention. In Vitro Cellular and Development Biology – Plant 41: 520-524. DOI: 10.1079/IVP2005647
2004
Rodrigues de Sousa H, Spencer-Martins I, Gonçalves P. 2004. Differential regulation by glucose and fructose of a gene encoding a specific fructose /H+ symporter in Saccharomyces sensu stricto yeasts. Yeast. 21: 519-530.
DOI: 10.1002/yea.1118 Pina C, Gonçalves P, Prista C, Loureiro-Dias MC. 2004. FFZ1, a new transporter specific for fructose from Zygosaccharomyces bailii. Microbiology 150: 2429-2433.
DOI: 10.1099/mic.0.26979-0.Sampaio JP, Inácio J, Fonseca Á, Gadanho M, Spencer-Martins I, Scorzetti G and Fell JW. 2004. Auriculibuller fuscus gen. nov., sp. nov. and Bullera japonica sp. nov., novel taxa in the Tremellales. International Journal of Systematic and Evolutionary Microbiology 54: 987-993. DOI: 10.1099/ijs.0.02970-0 Sampaio JP, Golubev WI, Fell JW, Gadanho M and Golubev NW. 2004. Curvibasidium cygneicollum gen. nov., sp. nov. and Curvibasidium pallidicorallinum sp. nov., novel taxa in the Microbotryomycetidae (Urediniomycetes), and their relationship with Rhodotorula fujisanensis and Rhodotorula nothofagi. International Journal of Systematic and Evolutionary Microbiology 54: 1401-1407. *cover DOI: 10.1099/ijs.0.03037-0 Golubev WI, Sampaio JP, Gadanho M and Golubev EW. 2004. Cryptococcus paraflavus sp. nov. (Tremellales), isolated from steppe plants in Russia. Journal of General and Applied Microbiology 50: 65-69. DOI:10.2323/jgam.50.65 Golubev WI, Sampaio JP, Alves L and Golubev NW. 2004. Cryptococcus festucosus sp. nov. a new hymenomycetous yeast in the Holtermannia clade. Canadian Journal of Microbiology 50: 1001-1006. DOI: 10.1139/W04-099 Gadanho M and Sampaio JP. 2004. Application of temperature gradient gel electrophoresis to the study of yeast diversity in the estuary of the Tagus river, Portugal. FEMS Yeast Research 5: 253-261. DOI: 10.1016/j.fem
2003
Kirschner R, Sampaio JP, Begerow D, Chen Z-C and Oberwinkler F. 2003. Mycogloea nipponica – the first known teleomorph in the heterobasidiomycetous yeast genus Kurtzmanomyces. Antonie van Leeuwenhoek 84: 109-114. DOI: 10.1023/A:1025484800974.Gadanho M, Almeida JMF and Sampaio JP. 2003. Assessment of yeast diversity in a marine environment in the South of Portugal by microsatellite-primed PCR. Antonie van Leeuwenhoek 84: 217-227. DOI: 10.1023/A:1026038213195.Libkind D, Brizzio S, Ruffini A, Gadanho M, van Broock M and Sampaio JP. 2003. Molecular characterization of carotenogenic yeasts from aquatic environments in Patagonia, Argentina. Antonie van Leeuwenhoek 84: 313-322. DOI: 10.1023/A:1026058116545.Sampaio JP, Gadanho M, Bauer, R and Weiß M. 2003. Taxonomic studies in the Microbotryomycetidae: Leucosporidium golubevii sp. nov., Leucosporidiella gen. nov. and the new orders Leucosporidiales and Sporidiobolales. Mycological Progress 2: 53-68. DOI: 10.1007/s11557-006-0044-5.Golubev WI, Gadanho M, Sampaio JP and Golubev NW. 2003. Cryptococcus nemorosus sp. nov. and Cryptococcus perniciosus sp. nov., related to Papiliotrema Sampaio et al. (Tremellales). International Journal of Systematic and Evolutionary Microbiology 53: 905-911. DOI: 10.1099/ijs.0.02374-0.
2002
Sampaio JP, Weiß M, Gadanho M and Bauer R. 2002. New taxa in the Tremellales: Bulleribasidium oberjochense gen. et sp. nov., Papiliotrema bandonii gen. et sp. nov. and Fibulobasidium murrhardtense sp. nov. Mycologia 94: 873-887. Gadanho M and Sampaio JP. 2002. Polyphasic taxonomy of the basidiomycetous yeast genus Rhodotorula: Rh. glutinis sensu stricto and Rh. dairenensis comb. nov. FEMS Yeast Research 2: 47-58. DOI: 10.1111/j.1567-1364.2002.tb00068.x Valério E, Gadanho M and Sampaio JP. 2002. Sporobolomyces odoratus sp. nov., a new species in the Sporidiobolus ruineniae clade. FEMS Yeast Research 2: 9-16. DOI: 10.1111/j.1567-1364.2002.tb00063.x
2001
Sampaio JP, Gadanho M and Bauer R. 2001. Taxonomic studies on the genus Cystofilobasidium: description of Cystofilobasidium ferigula sp. nov., and clarification of the status of Cystofilobasidium lari-marini. International Journal of Systematic and Evolutionary Microbiology 51: 221-229.
DOI: 10.1099/00207713-51-1-221.Sampaio JP, Gadanho M, Santos S, Duarte F, Pais C, Fonseca A and Fell JW 2001. Polyphasic taxonomy of the genus Rhodosporidium: R. kratochvilovae and related anamorphic species. International Journal of Systematic and Evolutionary Microbiology. 51: 687-697.
DOI: 10.1099/00207713-51-2-687.Gadanho M, Sampaio JP and Spencer-Martins I. 2001 Polyphasic taxonomy of the basidiomycetous yeast genus Rhodosporidium: R. azoricum sp. nov. Canadian Journal of Microbiology 47: 213-221. DOI 10.1139/w00-145 Kirschner R, Sampaio JP, Gadanho M, Weiss M and Oberwinkler F. 2001. Cuniculitrema polymorpha (Tremellales, gen. and sp. nov.), a heterobasidiomycete vectored by bark beetles which is the teleomorph of Sterigmatosporidium polymorphum. Antonie van Leeuwenhoek 80: 149-161. DOI: 10.1023/A:1012275204498
2000
Gonçalves P, Rodrigues de Sousa H, Spencer-Martins I. 2000. FSY1, a novel gene encoding a specific fructose/H+ symporter in the type strain of Saccharomyces carlsbergensis. J Bacteriol.182: 5628-5630.
Fonseca A, Sampaio JP, Inácio J and Fell JW. 2000. Emendation of the basidiomycetous yeast genus Kondoa and the description of Kondoa aeria sp. nov. Antonie van Leeuwenhoek 77: 293-302. DOI: 10.1023/A:1002453628455
1999-1989
Sampaio JP. 1999. Utilization of low molecular weight aromatic compounds by heterobasidiomycetous yeasts: taxonomic implications. Canadian Journal of Microbiology 45: 491-512. DOI 10.1139/w99-020
Sampaio JP, Bauer R, Begerow D and Oberwinkler F. 1999. Occultifur externus sp. nov., a new species of simple-pored auricularioid heterobasidiomycete from plant litter in Portugal. Mycologia 91: 1094-1101.
Sampaio JP, Fell JW, Gadanho M and Bauer R. 1999. Kurtzmanomyces insolitus sp. nov., an anamorphic heterobasidiomycetous yeast species. Systematic and Applied Microbiology 22: 619-625. doi:10.1016/S0723-2020(99)80015-0
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de Boer M, Bebelman JP, Gonçalves PM, Maat J, van Heerikhuizen H, Planta RJ. 1998. Regulation of expression of the amino acid transporter gene BAP3 in Saccharomyces cerevisiae. Mol. Microbiol. 30: 613-622.
Gonçalves PM, Griffioen G, Bebelman JP, Planta RJ. 1997. Signalling pathways leading to transcriptional regulation of genes involved in the activation of glycolysis in yeast. Mol. Microbiol. 3: 483-493.
Sampaio JP and Fonseca A. 1995 Physiological aspects in the systematics of heterobasidiomycetous yeasts. Studies in Mycology 38: 29-46.
Gonçalves PM, Maurer K, van Nieuw Amerongen G, Bergkamp-Steffens K, Mager WH, Planta RJ. 1995.
C-terminal domains of general regulatory factors Abf1p and Rap1p in Saccharomyces cerevisiae display functional similarity. Mol. Microbiol., 19:535-543.
Planta RJ, Gonçalves PM, Mager WH. 1995. Global regulators of ribosome biosynthesis in yeast. Biochem. Cell Biol. 73: 825-834.
Gonçalves PM, Griffioen G, Minnee R, Bosma M, Kraakman LS, Mager WH, Planta RJ. 1995. Transcription activation of yeast ribosomal protein genes requires additional elements apart from binding sites for Abf1p or Rap1p. Nucleic Acids Res. 23: 1475-1480.
Sampaio JP. 1994. Utilization of low molecular weight lignin-related aromatic compounds for the selective isolation of yeasts: Rhodotorula vanillica, a new basidiomycetous yeast species. Systematic and Applied Microbiology 17: 613-619. doi:10.1016/S0723-2020(11)80083-4
Boekhout T, Fonseca A, Sampaio JP and Golubev WI. 1993. Classification of heterobasidiomycetous yeasts: characteristics and affiliation of genera to higher taxa of Heterobasidiomycetes. Canadian Journal of Microbiology 39: 276-290. DOI 10.1139/m93-040
Gonçalves PM, Maurer K, Mager WH, Planta RJ. 1992. Kluyveromyces contains a functional ABF1-homologue. Nucleic Acids Res. 20: 2211-2215.
Fonseca A and Sampaio JP. 1992. Rhodosporidium lusitaniae sp. nov., a novel homothallic basidiomycetous yeast species from Portugal that degrades phenolic compounds. Systematic and Applied Microbiology 15: 47-51.
Sampaio JP and van Uden N. 1991. Rhodotorula ferulica sp. nov., a yeast that degrades ferulic acid and other phenolic compounds. Systematic and Applied Microbiology 14: 146-149.
Musters W, Gonçalves PM, Boon K, Raue HA, van Heerikhuizen H, Planta RJ. 1991. The conserved GTPase center and variable region V9 from Saccharomyces cerevisiae 26S rRNA can be replaced by their equivalents from other prokaryotes or eukaryotes without detectable loss of ribosomal function. Proc. Natl. Acad. Sci. U. S. A. 88: 1469-1473.
Sampaio JP and Spencer-Martins I. 1989. Adaptive growth at high temperatures of the lactose-fermenting yeast Kluyveromyces marxianus var. marxianus. Journal of Basic Microbiology 29: 61-64.
The Yeast Genomics* Lab @ NOVA 